Microorganisms: Bacteria, Viruses, Fungi and Diseases
Science notes on microorganisms for exams: bacteria, viruses, fungi and protozoa, the diseases and carriers, and the useful microbes in food, farming and medicine.
By GK24 Editorial Team· Published · 5 min read

Microorganisms are living forms too small to be seen with the naked eye. They were first seen in the 1670s by Antonie van Leeuwenhoek with his own simple microscope, and the study of them, microbiology, was built in the nineteenth century by Louis Pasteur, who disproved spontaneous generation, established the germ theory of disease and gave the world pasteurisation, and by Robert Koch, who identified the bacteria of anthrax and tuberculosis and laid down the postulates by which a microbe is proved to cause a disease. Five groups are studied together under the name: bacteria, viruses, fungi, protozoa and some algae.
Bacteria
Bacteria are prokaryotes: a single cell with no membrane-bound nucleus, no mitochondria or plastids, a cell wall of peptidoglycan, ribosomes of the 70S type and often a plasmid carrying extra genes. They multiply by binary fission, which is why their numbers rise so fast in warm, moist food. By shape they are divided into cocci, which are spherical, bacilli, which are rod-shaped, spirilla, which are spiral, and vibrios, which are comma-shaped; by the stain devised by Christian Gram they are divided into Gram-positive and Gram-negative, a difference that decides which antibiotic will work. Some bacteria are useful beyond measure. Rhizobium lives in the root nodules of leguminous plants and fixes atmospheric nitrogen; Azotobacter does so living free in the soil, and the cyanobacteria Nostoc and Anabaena do so in water. Nitrosomonas and Nitrobacter carry out nitrification, turning ammonia into nitrites and then nitrates, while Pseudomonas returns nitrogen to the air by denitrification. Lactobacillus turns milk into curd and Acetobacter turns alcohol into vinegar. Others cause disease: Mycobacterium tuberculosis, Vibrio cholerae, Salmonella typhi, Clostridium tetani, Corynebacterium diphtheriae, Yersinia pestis, Mycobacterium leprae and Bacillus anthracis.
Viruses
A virus is not a cell. It is a particle of nucleic acid, either DNA or RNA but never both, wrapped in a protein coat called the capsid, which is built of units called capsomeres; some also carry an outer envelope. A virus has no metabolism of its own and can multiply only inside a living host cell, which is why it is described as standing on the border of the living and the non-living: inert, even crystallisable, outside a host, and fully active within one. Dmitri Ivanovsky showed in 1892 that the agent of tobacco mosaic disease passed through a filter that held back bacteria, Martinus Beijerinck named such an agent a virus, and W. M. Stanley crystallised the tobacco mosaic virus in 1935. A virus that attacks bacteria is a bacteriophage. Human viral diseases include influenza, the common cold, measles, mumps, chickenpox, smallpox, poliomyelitis, rabies, hepatitis, dengue, chikungunya and acquired immune deficiency syndrome, caused by the human immunodeficiency virus, a retrovirus. Antibiotics do not work against viruses; vaccines and antiviral drugs do.
Fungi
Fungi are eukaryotes with a cell wall of chitin, and they are heterotrophic, living as saprophytes on dead matter, as parasites on living hosts, or in symbiosis. Most are made of thread-like hyphae forming a mycelium, and they reproduce by spores. The yeast Saccharomyces cerevisiae is a single-celled fungus used to leaven bread and to brew alcohol, because in fermentation it converts sugar to ethanol and carbon dioxide. Penicillium gave the first antibiotic, Aspergillus is used for citric acid, Rhizopus is the common bread mould and Agaricus is the edible mushroom. In partnership, fungi form mycorrhiza with plant roots, which helps the plant absorb phosphorus, and lichens with algae. Fungi also cause disease: ringworm and athlete's foot in human beings, and rust of wheat, smut and late blight in crops.
Protozoa, algae and the carriers of disease
Protozoa are single-celled eukaryotes, and several are parasites of man: Plasmodium causes malaria, Entamoeba histolytica amoebic dysentery, Giardia giardiasis, Leishmania donovani kala-azar and Trypanosoma sleeping sickness. Many such diseases reach us through a carrier, or vector, and the vector is asked for as often as the pathogen.
| Disease | Pathogen group | Carrier or spread |
|---|---|---|
| Malaria | Protozoan, Plasmodium | Female Anopheles mosquito |
| Dengue and chikungunya | Virus | Aedes aegypti mosquito |
| Kala-azar | Protozoan, Leishmania | Sandfly |
| Plague | Bacterium, Yersinia pestis | Rat flea |
| Cholera and typhoid | Bacteria | Contaminated water and food |
| Tuberculosis and influenza | Bacterium and virus | Air, by droplets |
| Rabies | Virus | Bite of an infected animal |
Microbes at work for us
Fermentation by microbes gives curd, cheese, idli and dosa batter, bread, vinegar and alcoholic drinks. Antibiotics are microbial products: Alexander Fleming noticed in 1928 that a mould of the genus Penicillium stopped the growth of Staphylococcus, and Howard Florey and Ernst Chain turned the observation into penicillin, the three sharing the Nobel Prize; streptomycin comes from Streptomyces griseus. Industry uses Aspergillus niger for citric acid, Lactobacillus for lactic acid, yeast for ethanol, Monascus purpureus for the cholesterol-lowering statins and a fungus for the immunosuppressant cyclosporin A. Agriculture uses biofertilisers such as Rhizobium, Azotobacter, the Azolla-Anabaena association and mycorrhizal fungi, and biocontrol agents such as Bacillus thuringiensis against caterpillars and Trichoderma against plant pathogens. Methanogenic bacteria in a gobar gas plant produce biogas, which is mostly methane, from cattle dung; in sewage treatment aerobic microbes in the activated sludge process break down organic matter, and anaerobic digestion of the sludge yields more biogas. Genetic engineering uses bacteria such as Escherichia coli as factories for human insulin and other proteins.
Spoilage, preservation and resistance
The same organisms spoil food and cause infection. Food is kept safe by drying, salting, sugaring, pickling in oil and vinegar, refrigeration and heat. Pasteurisation, Pasteur's own method, heats milk to about seventy degrees Celsius for fifteen to thirty seconds and then chills it quickly, which kills the harmful microbes without changing the taste. Antibiotics taken carelessly or left half-finished allow resistant bacteria to survive and spread, which is why a course must be completed and why antibiotics are useless and harmful in a viral illness such as a cold.
Exam Point of View
Papers ask the organism for a disease and the carrier that brings it, the scientist for a discovery, and the microbe behind a product. Sure favourites are Lactobacillus for curd, yeast for bread and alcohol, Rhizobium for nitrogen fixation, Fleming for penicillin, Plasmodium with Anopheles and Aedes for dengue, the chitin and peptidoglycan walls, and the pasteurisation figures. The traps are treating a viral disease as bacterial and prescribing antibiotics for it, giving a virus both DNA and RNA, calling fungi autotrophic, and swapping Anopheles with Aedes or Nitrosomonas with Nitrobacter.
Important Facts
| First seen by | Antonie van Leeuwenhoek, in the 1670s, with his own microscope |
|---|---|
| Germ theory and pasteurisation | Louis Pasteur |
| Koch's postulates | Robert Koch, who identified the anthrax and tuberculosis bacteria |
| Bacterial cell wall | Peptidoglycan; fungal cell wall is chitin |
| Nitrogen fixation | Rhizobium in legume root nodules, Azotobacter free living, Nostoc and Anabaena in water |
| Nitrification | Nitrosomonas turns ammonia to nitrite and Nitrobacter nitrite to nitrate |
| Curd and vinegar | Lactobacillus and Acetobacter |
| Virus composition | DNA or RNA, never both, in a protein capsid of capsomeres |
| Penicillin | Alexander Fleming, 1928, from a Penicillium mould; developed with Florey and Chain |
| Streptomycin | From Streptomyces griseus |
| Malaria | Plasmodium, carried by the female Anopheles mosquito |
| Dengue and chikungunya | Viral, carried by the Aedes aegypti mosquito |
| Kala-azar | Leishmania donovani, carried by the sandfly |
| Citric acid | Produced industrially by the fungus Aspergillus niger |
| Biogas | Mainly methane, produced from cattle dung by methanogenic bacteria |
| Pasteurisation | About 70 degrees Celsius for 15 to 30 seconds, followed by rapid chilling |
Practice MCQs on this topic
Which microorganism is responsible for the setting of milk into curd?
- A.Lactobacillus
- B.Rhizobium
- C.Penicillium
- D.Plasmodium
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Explanation
The correct answer is A, Lactobacillus. This bacterium ferments the lactose of milk into lactic acid, and the acid makes the milk protein coagulate, which is why a spoonful of old curd added to warm milk sets the whole vessel. Option B is wrong because Rhizobium lives in the root nodules of leguminous plants and fixes atmospheric nitrogen; it has nothing to do with milk. Option C is wrong because Penicillium is the mould from which penicillin was obtained and which also ripens certain cheeses, but it does not set curd. Option D is wrong because Plasmodium is the protozoan parasite of malaria, carried by the female Anopheles mosquito. The other food example worth remembering with this one is Acetobacter, which turns alcohol into vinegar.
Penicillin, the first antibiotic, was discovered in 1928 by
- A.Louis Pasteur
- B.Robert Koch
- C.Alexander Fleming
- D.Edward Jenner
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Explanation
The correct answer is C, Alexander Fleming. He noticed that a mould of the genus Penicillium growing by accident on a culture plate had stopped the growth of Staphylococcus around it, and Howard Florey and Ernst Chain later turned that observation into a usable drug, the three sharing the Nobel Prize. Option A is wrong because Louis Pasteur established the germ theory of disease, disproved spontaneous generation and developed pasteurisation and the rabies vaccine. Option B is wrong because Robert Koch identified the bacteria of anthrax and tuberculosis and framed the postulates for proving that a microbe causes a disease. Option D is wrong because Edward Jenner introduced vaccination against smallpox in 1796, long before antibiotics existed, using material from cowpox. Streptomycin, the next famous antibiotic, came from Streptomyces griseus, and remembering the pair Fleming with Penicillium and streptomycin with Streptomyces settles most questions on antibiotics.
Malaria is caused by which organism, and which vector transmits it?
- A.A virus, carried by the Aedes aegypti mosquito
- B.The protozoan Plasmodium, carried by the female Anopheles mosquito
- C.A bacterium, carried by the rat flea
- D.A fungus, spread through contaminated water
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Explanation
The correct answer is B. Malaria is caused by the protozoan parasite Plasmodium, of which several species infect human beings, and it is transmitted by the bite of an infected female Anopheles mosquito, the male feeding on plant juices. Option A is wrong because Aedes aegypti carries the viral diseases dengue, chikungunya, yellow fever and Zika, and this pairing is the commonest confusion in the chapter. Option C is wrong because the rat flea carries plague, caused by the bacterium Yersinia pestis. Option D is wrong because no fungus causes malaria; waterborne diseases spread that way are cholera, typhoid and amoebic dysentery. Ronald Ross, working in India, showed the role of the mosquito in the spread of malaria. Prevention rests on destroying breeding places of mosquitoes, using nets and treating patients early, since the parasite completes part of its life cycle in the mosquito and part in the human liver and red blood cells.
The cell wall of a bacterium is mainly made of
- A.Cellulose
- B.Chitin
- C.Peptidoglycan
- D.Lignin
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Explanation
The correct answer is C, peptidoglycan, also called murein, a mesh of sugar chains cross-linked by short peptides. It is the target of penicillin, which blocks its formation, and the amount of it in the wall is what makes a bacterium stain Gram-positive or Gram-negative. Option A is wrong because cellulose is the wall material of plant cells and of some algae. Option B is wrong because chitin forms the wall of fungi and also the exoskeleton of insects and other arthropods, and this is the pair most often interchanged in examinations. Option D is wrong because lignin strengthens the walls of woody plant tissue and is not a microbial wall material. The wall is absent in a virus altogether, since a virus is not a cell.
Which of the following diseases is caused by a virus?
- A.Tuberculosis
- B.Measles
- C.Typhoid
- D.Cholera
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Explanation
The correct answer is B, measles, a viral disease spread by droplets, which is why it is prevented by vaccination and not treated with antibiotics. Option A is wrong because tuberculosis is caused by the bacterium Mycobacterium tuberculosis, identified by Robert Koch, and is treated with a long course of antibiotics. Option C is wrong because typhoid is caused by the bacterium Salmonella typhi and spreads through contaminated food and water. Option D is wrong because cholera is caused by the bacterium Vibrio cholerae and also spreads through contaminated water. Other viral diseases worth listing together are influenza, the common cold, mumps, chickenpox, smallpox, poliomyelitis, rabies, hepatitis, dengue and the acquired immune deficiency syndrome. The simple test in such a question is whether a vaccine or an antibiotic is the remedy: a vaccine points to a virus and a course of antibiotics to a bacterium.
Nitrogen fixation in the root nodules of leguminous plants is carried out by
- A.Rhizobium
- B.Nitrobacter
- C.Pseudomonas
- D.Saccharomyces
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Explanation
The correct answer is A, Rhizobium. It lives in a symbiotic relationship inside the nodules on the roots of gram, pea, groundnut and other legumes, converting atmospheric nitrogen into compounds the plant can absorb while drawing its food from the plant. Option B is wrong because Nitrobacter does not fix nitrogen but carries out the second step of nitrification, oxidising nitrite to nitrate after Nitrosomonas has turned ammonia into nitrite. Option C is wrong because Pseudomonas performs denitrification, returning nitrogen from the soil to the atmosphere, the opposite of fixation. Option D is wrong because Saccharomyces is the yeast used in baking and brewing. Azotobacter fixes nitrogen while living free in the soil, and the cyanobacteria Nostoc and Anabaena do so in water. This is why pulses are sown in rotation with cereals, and why Rhizobium is sold to farmers as a biofertiliser in place of costly nitrogenous fertiliser.
The cell wall of fungi is composed of
- A.Peptidoglycan
- B.Chitin
- C.Cellulose only
- D.Protein only
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Explanation
The correct answer is B, chitin. Fungi are eukaryotes with a true nucleus, and their wall is built of chitin, the same tough polysaccharide that forms the exoskeleton of insects and crustaceans. Option A is wrong because peptidoglycan is the bacterial wall material, and keeping the two apart, chitin for fungi and peptidoglycan for bacteria, answers a whole family of questions. Option C is wrong because cellulose is characteristic of plant cell walls, though some fungal relatives among the water moulds do contain it. Option D is wrong because protein alone forms no cell wall; proteins are present in the wall but it is the polysaccharide that gives it strength. Fungi are heterotrophic, living as saprophytes, parasites or symbionts, never making their own food. Yeast is the exception among them, a single-celled fungus, and mushrooms, moulds and the mildews are the forms a student meets most often.
The rising of dough in bread making is due to the action of
- A.Bacteria producing lactic acid
- B.Yeast producing carbon dioxide
- C.A virus multiplying in the flour
- D.Protozoa feeding on starch
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Explanation
The correct answer is B, yeast producing carbon dioxide. The yeast Saccharomyces cerevisiae ferments the sugars of the dough into ethanol and carbon dioxide, and the gas, trapped in the gluten, makes the dough rise and leaves the bread spongy; the alcohol evaporates during baking. Option A is wrong because lactic acid bacteria sour milk into curd and are what make idli and dosa batter tangy, though their gas plays a smaller part than yeast's. Option C is wrong because a virus cannot multiply except inside a living host cell and has no role in dough. Option D is wrong because protozoa are not used in baking at all. The same fermentation by yeast, carried further, yields alcoholic drinks and industrial ethanol. The gluten of wheat flour is what traps the gas, which is why bread made from wheat rises better than bread of flours poor in gluten.
Tuberculosis in human beings is caused by
- A.A virus
- B.The bacterium Mycobacterium tuberculosis
- C.A fungus of the genus Aspergillus
- D.The protozoan Entamoeba histolytica
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Explanation
The correct answer is B, the bacterium Mycobacterium tuberculosis, identified by Robert Koch in 1882, which is why the organism is also called Koch's bacillus. It spreads through droplets in the air, chiefly attacks the lungs, and is treated with a long and uninterrupted course of several antibiotics. Option A is wrong because tuberculosis is bacterial; treating it as viral is the error that leads candidates to rule out antibiotics. Option C is wrong because Aspergillus causes other lung conditions in people with weak immunity and is used industrially for citric acid, but it does not cause tuberculosis. Option D is wrong because Entamoeba histolytica causes amoebic dysentery, a disease of the intestine spread by contaminated food and water. Leprosy is caused by a related species, Mycobacterium leprae.
Viruses are described as standing on the border of the living and the non-living chiefly because
- A.they are smaller than bacteria
- B.they can multiply only inside a living host cell and are inert outside it
- C.they contain both DNA and RNA
- D.they can be killed by antibiotics
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Explanation
The correct answer is B. A virus has heredity and mutates like a living thing, yet it has no cell, no metabolism and no means of reproduction of its own; outside a host it is an inert particle that can even be crystallised, as W. M. Stanley showed with the tobacco mosaic virus in 1935, while inside a host cell it directs that cell to make copies of itself. Option A is wrong because small size alone says nothing about being alive; many bacteria are tiny and are fully living. Option C is wrong because a virus carries either DNA or RNA and never both, a favourite point of examiners. Option D is wrong because antibiotics act on bacterial structures and are useless against viruses, which are controlled by vaccines and antiviral drugs.
In the pasteurisation of milk, the milk is heated to about
- A.40 degrees Celsius for five minutes
- B.70 degrees Celsius for 15 to 30 seconds
- C.100 degrees Celsius for ten minutes
- D.121 degrees Celsius for twenty minutes
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Explanation
The correct answer is B, 70 degrees Celsius for 15 to 30 seconds, followed by rapid chilling and storage. The short, sharp heating kills the disease-causing and most spoilage microbes while leaving the taste and most of the food value of the milk unchanged, which is exactly what boiling does not do. Option A is wrong because forty degrees is close to the temperature at which microbes grow best and would preserve nothing. Option C is wrong because a hundred degrees for ten minutes is ordinary boiling, which alters taste and destroys some vitamins. Option D is wrong because a hundred and twenty-one degrees under pressure for twenty minutes describes autoclaving, used to sterilise instruments and culture media, not milk. The method is named after Louis Pasteur.
Citric acid is produced commercially with the help of which microorganism?
- A.Aspergillus niger
- B.Lactobacillus bulgaricus
- C.Clostridium tetani
- D.Anabaena
Show answer
Explanation
The correct answer is A, Aspergillus niger, a fungus grown on a sugar medium to make most of the world's citric acid, which is used in soft drinks, food and medicines. Option B is wrong because Lactobacillus species produce lactic acid and are used in curd and other fermented milk products, not citric acid. Option C is wrong because Clostridium tetani is the bacterium of tetanus, an anaerobe that enters through wounds; it is a pathogen, not an industrial organism, although a related species yields butyric acid. Option D is wrong because Anabaena is a nitrogen-fixing cyanobacterium, used with the water fern Azolla as a biofertiliser in paddy fields. Other industrial pairs to remember are Saccharomyces for ethanol and Monascus purpureus for statins. Remembering a product with its organism, acid with Aspergillus, alcohol with yeast and antibiotic with Streptomyces, answers a whole set of questions on industrial microbiology.
Frequently Asked Questions
Why are viruses said to be on the border of the living and the non-living?
Outside a host a virus shows none of the signs of life: it does not respire, grow or reproduce, and it can even be crystallised like a chemical. Inside a living cell it takes over the cell's machinery, makes copies of its nucleic acid and protein coat and multiplies like any living thing. Because it has heredity and mutation but no metabolism or cell of its own, it is placed between the two worlds.
Why do antibiotics not work against viral diseases?
Antibiotics attack structures and processes that bacteria have and viruses do not, such as the peptidoglycan cell wall, bacterial ribosomes and bacterial enzymes. A virus has no cell wall and no metabolism of its own, so there is nothing for the drug to act upon. Viral illnesses are prevented by vaccines and treated with antiviral drugs, and taking antibiotics for a cold only breeds resistant bacteria.
How does Rhizobium help a farmer?
Rhizobium lives in the root nodules of leguminous plants such as gram, pea, groundnut and beans and converts nitrogen from the air into compounds the plant can use, in return for food from the plant. The field therefore gains nitrogen instead of losing it, which is why pulses are grown in rotation with cereals and why Rhizobium is sold as a biofertiliser.
What is the difference between bacteria and fungi?
Bacteria are prokaryotes: single cells with no membrane-bound nucleus and a cell wall of peptidoglycan, multiplying by binary fission. Fungi are eukaryotes with a true nucleus and a cell wall of chitin, usually made of hyphae forming a mycelium and reproducing by spores; yeast is a single-celled exception. Both are heterotrophic in the main, but the wall material and the nucleus are the differences an examiner looks for.
What happens during pasteurisation of milk?
The milk is heated to about seventy degrees Celsius and held there for fifteen to thirty seconds, then chilled rapidly and stored. The short, sharp heating kills the disease-causing microbes and most of the spoilage organisms without boiling the milk, so the taste and most of the nutritive value are kept. The method is named after Louis Pasteur, who worked it out while studying the spoiling of wine.
Sources
- Science (Class VIII), chapter on Microorganisms: Friend and Foe — NCERT
- Biology (Class XI), chapter on Biological Classification — NCERT
- Biology (Class XII), chapter on Microbes in Human Welfare — NCERT





